BLAZE Identifying cell barcodes from long-read single-cell RNA-seq. Published in Genome Biology (2023). NanoSplicer Accurate identification of splice junctions using Oxford Nanopore sequencing. Published in Bioinformatics (2022). McSplicer Estimating splice site usage from short-read RNA-seq data. Published in Bioinformatics (2021). multiseq Bayesian multi-scale models for Poisson processes, for differential expression analysis of high-throughput sequencing data. Published in AOAS (2024). WaveQTL Wavelet-based genetic association analysis of high-throughput sequencing data. Published in Annals of Applied Statistics (2015). mvBIMBAM Multivariate genome-wide association analysis. Published in PLoS ONE (2015). BayesCAT Bayesian Co-estimation of Alignment and Tree, jointly estimating sequence alignment and phylogeny. Published in Biometrics (2017).